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Command Conference

A meeting of the commander with some or all of his officers, usually (always?) in the commander's office in Y1.

MOLAD: Discuss the initial findings on: Lee Russell (or more accurately, whether or not it is him), Terra Nova, and potential Operation Exodus. Attended by John Koenig, Paul Morrow, Alan Carter, David Kano, Sandra Benes, and Victor Bergman; but not by Helena Russell (presumably due to her watching the medical state of the unconcious Lee, the two pilots, and perhaps a conflict of interest?).
"Earthbound": John Koenig, Paul Morrow, Alan Carter, Helena Russell, Commissioner Simmonds. It is just wrapping up when the scene starts, until Simmonds objects, saying how he is "shocked" they are not trying hard enough to return to Earth. John: "Our priorities are survival, and the search for an alternative place to live."
"Guardian of Piri": An initial one features an argument between David Kano and Alan Carter over how much to trust Computer.
GOP (again): A later, off-kilter one, during the time of the Guardian's clear influence over the Alphans, is attended by at least Paul, Helena, (Kano?,) Sandra, Victor, and a Security Section representative -- but not initially by John, who stumbles upon it later.
"War Games": the severity of the damage (later reset) is laid out by the officers.
"Troubled Spirit": John, Alan, David, Helena, Paul, Victor, Sandra -- after the death of Dr. James Warren.

Though no formal conferences took place "on screen" in Y2 it is possible some took place "off screen" in some nearby room, even while some discussions usually done in Command Conferences in Y1 simply took place in Command Center in Y2.